Coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft
Identifieur interne : 001067 ( Main/Exploration ); précédent : 001066; suivant : 001068Coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft
Auteurs : Xing-Yi Ge [République populaire de Chine] ; Ning Wang [République populaire de Chine] ; Wei Zhang [République populaire de Chine] ; Ben Hu [République populaire de Chine] ; Bei Li [République populaire de Chine] ; Yun-Zhi Zhang [République populaire de Chine] ; Ji-Hua Zhou [République populaire de Chine] ; Chu-Ming Luo [République populaire de Chine] ; Xing-Lou Yang [République populaire de Chine] ; Li-Jun Wu [République populaire de Chine] ; Bo Wang [République populaire de Chine] ; Yun Zhang [République populaire de Chine] ; Zong-Xiao Li [République populaire de Chine] ; Zheng-Li Shi [République populaire de Chine]Source :
- Virologica Sinica [ 1674-0769 ] ; 2016.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de séquence d'ADN, Animaux, Chine (épidémiologie), Chiroptera (virologie), Coronavirus (génétique), Coronavirus (isolement et purification), Génome viral, Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (virologie), Infections à coronavirus (épidémiologie), Phylogénie, RNA replicase (génétique), Réaction de polymérisation en chaîne (), Syndrome respiratoire aigu sévère (génétique), Syndrome respiratoire aigu sévère (médecine vétérinaire), Syndrome respiratoire aigu sévère (épidémiologie), Séquence d'acides aminés, Séquence nucléotidique, Virus du SRAS (génétique), Virus du SRAS (isolement et purification).
- MESH :
- génétique : ARN viral, Coronavirus, RNA replicase, Syndrome respiratoire aigu sévère, Virus du SRAS.
- isolement et purification : Coronavirus, Virus du SRAS.
- médecine vétérinaire : Infections à coronavirus, Syndrome respiratoire aigu sévère.
- virologie : Chiroptera, Infections à coronavirus.
- épidémiologie : Chine, Infections à coronavirus, Syndrome respiratoire aigu sévère.
- Analyse de séquence d'ADN, Animaux, Génome viral, Phylogénie, Réaction de polymérisation en chaîne, Séquence d'acides aminés, Séquence nucléotidique.
English descriptors
- KwdEn :
- Amino Acid Sequence, Animals, Base Sequence, China (epidemiology), Chiroptera (virology), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (epidemiology), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Genome, Viral, Phylogeny, Polymerase Chain Reaction (methods), RNA Replicase (genetics), RNA, Viral (genetics), SARS Virus (genetics), SARS Virus (isolation & purification), Sequence Analysis, DNA, Severe Acute Respiratory Syndrome (epidemiology), Severe Acute Respiratory Syndrome (genetics), Severe Acute Respiratory Syndrome (veterinary).
- MESH :
- chemical , genetics : RNA Replicase, RNA, Viral.
- epidemiology : China, Coronavirus Infections, Severe Acute Respiratory Syndrome.
- genetics : Coronavirus, SARS Virus, Severe Acute Respiratory Syndrome.
- isolation & purification : Coronavirus, SARS Virus.
- methods : Polymerase Chain Reaction.
- veterinary : Coronavirus Infections, Severe Acute Respiratory Syndrome.
- virology : Chiroptera, Coronavirus Infections.
- Amino Acid Sequence, Animals, Base Sequence, Genome, Viral, Phylogeny, Sequence Analysis, DNA.
Abstract
Since the 2002–2003 severe acute respiratory syndrome (SARS) outbreak prompted a search for the natural reservoir of the SARS coronavirus, numerous alpha- and betacoronaviruses have been discovered in bats around the world. Bats are likely the natural reservoir of alpha- and betacoronaviruses, and due to the rich diversity and global distribution of bats, the number of bat coronaviruses will likely increase. We conducted a surveillance of coronaviruses in bats in an abandoned mineshaft in Mojiang County, Yunnan Province, China, from 2012–2013. Six bat species were frequently detected in the cave:
Supplementary material is available for this article at 10.1007/s12250-016-3713-9 and is accessible for authorized users.
Url:
DOI: 10.1007/s12250-016-3713-9
PubMed: 26920708
PubMed Central: 7090819
Affiliations:
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Le document en format XML
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China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Dali</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.440682.c</institution-id><institution>School of Public Health,</institution><institution>Dali University,</institution></institution-wrap>Dali, 671000 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Dali</wicri:regionArea></affiliation></author><author><name sortKey="Zhou, Ji Hua" sort="Zhou, Ji Hua" uniqKey="Zhou J" first="Ji-Hua" last="Zhou">Ji-Hua Zhou</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.464498.3</institution-id><institution>Yunnan Provincial Key Laboratory for Zoonosis Control and Prevention,</institution><institution>Yunnan Institute of Endemic Diseases Control and 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id="Aff4">Mojiang Center for Diseases Control and Prevention, Mojiang, 654800 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Mojiang Center for Diseases Control and Prevention, Mojiang</wicri:regionArea><wicri:noRegion>Mojiang</wicri:noRegion></affiliation></author><author><name sortKey="Li, Zong Xiao" sort="Li, Zong Xiao" uniqKey="Li Z" first="Zong-Xiao" last="Li">Zong-Xiao Li</name><affiliation wicri:level="1"><nlm:aff id="Aff4">Mojiang Center for Diseases Control and Prevention, Mojiang, 654800 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Mojiang Center for Diseases Control and Prevention, Mojiang</wicri:regionArea><wicri:noRegion>Mojiang</wicri:noRegion></affiliation></author><author><name sortKey="Shi, Zheng Li" sort="Shi, Zheng Li" uniqKey="Shi Z" first="Zheng-Li" last="Shi">Zheng-Li Shi</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.9227.e</institution-id><institution-id institution-id-type="ISNI">0000000119573309</institution-id><institution>Key Laboratory of Special Pathogens, Wuhan Institute of Virology,</institution><institution>Chinese Academy of Sciences,</institution></institution-wrap>Wuhan, 430071 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Wuhan</wicri:regionArea></affiliation></author></analytic><series><title level="j">Virologica Sinica</title><idno type="ISSN">1674-0769</idno><idno type="eISSN">1995-820X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>China (epidemiology)</term><term>Chiroptera (virology)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Coronavirus Infections (epidemiology)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Genome, Viral</term><term>Phylogeny</term><term>Polymerase Chain Reaction (methods)</term><term>RNA Replicase (genetics)</term><term>RNA, Viral (genetics)</term><term>SARS Virus (genetics)</term><term>SARS Virus (isolation & purification)</term><term>Sequence Analysis, DNA</term><term>Severe Acute Respiratory Syndrome (epidemiology)</term><term>Severe Acute Respiratory Syndrome (genetics)</term><term>Severe Acute Respiratory Syndrome (veterinary)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Chine (épidémiologie)</term><term>Chiroptera (virologie)</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Génome viral</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Infections à coronavirus (épidémiologie)</term><term>Phylogénie</term><term>RNA replicase (génétique)</term><term>Réaction de polymérisation en chaîne ()</term><term>Syndrome respiratoire aigu sévère (génétique)</term><term>Syndrome respiratoire aigu sévère (médecine vétérinaire)</term><term>Syndrome respiratoire aigu sévère (épidémiologie)</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Virus du SRAS (génétique)</term><term>Virus du SRAS (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA Replicase</term><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>China</term><term>Coronavirus Infections</term><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term><term>SARS Virus</term><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Coronavirus</term><term>RNA replicase</term><term>Syndrome respiratoire aigu sévère</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Chine</term><term>Infections à coronavirus</term><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Genome, Viral</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Génome viral</term><term>Phylogénie</term><term>Réaction de polymérisation en chaîne</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Since the 2002–2003 severe acute respiratory syndrome (SARS) outbreak prompted a search for the natural reservoir of the SARS coronavirus, numerous alpha- and betacoronaviruses have been discovered in bats around the world. Bats are likely the natural reservoir of alpha- and betacoronaviruses, and due to the rich diversity and global distribution of bats, the number of bat coronaviruses will likely increase. We conducted a surveillance of coronaviruses in bats in an abandoned mineshaft in Mojiang County, Yunnan Province, China, from 2012–2013. Six bat species were frequently detected in the cave: <italic>Rhinolophus sinicus</italic>, <italic>Rhinolophus affinis</italic>, <italic>Hipposideros pomona</italic>, <italic>Miniopterus schreibersii</italic>, <italic>Miniopterus fuliginosus</italic>, and <italic>Miniopterus fuscus</italic>. By sequencing PCR products of the coronavirus RNA-dependent RNA polymerase gene (<italic>RdRp</italic>), we found a high frequency of infection by a diverse group of coronaviruses in different bat species in the mineshaft. Sequenced partial <italic>RdRp</italic> fragments had 80%–99% nucleic acid sequence identity with well-characterized <italic>Alphacoronavirus</italic> species, including BtCoV HKU2, BtCoV HKU8, and BtCoV1, and unassigned species BtCoV HKU7 and BtCoV HKU10. Additionally, the surveillance identified two unclassified betacoronaviruses, one new strain of SARS-like coronavirus, and one potentially new betacoronavirus species. Furthermore, coronavirus co-infection was detected in all six bat species, a phenomenon that fosters recombination and promotes the emergence of novel virus strains. Our findings highlight the importance of bats as natural reservoirs of coronaviruses and the potentially zoonotic source of viral pathogens.<graphic position="anchor" xlink:href="12250_2016_3713_Figa_HTML" id="d29e316"></graphic></p><sec><title>Electronic Supplementary Material</title><p>Supplementary material is available for this article at 10.1007/s12250-016-3713-9 and is accessible for authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Anthony, Sj" uniqKey="Anthony S">SJ Anthony</name></author><author><name sortKey="Ojeda Flores, R" uniqKey="Ojeda Flores R">R Ojeda-Flores</name></author><author><name sortKey="Rico Chavez, O" uniqKey="Rico Chavez O">O Rico-Chavez</name></author><author><name sortKey="Navarrete Macias, I" uniqKey="Navarrete Macias I">I Navarrete-Macias</name></author><author><name sortKey="Zambrana Torrelio, Cm" uniqKey="Zambrana Torrelio C">CM Zambrana-Torrelio</name></author><author><name 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Tsang</name></author><author><name sortKey="Wang, M" uniqKey="Wang M">M Wang</name></author><author><name sortKey="Zheng, Bj" uniqKey="Zheng B">BJ Zheng</name></author><author><name sortKey="Chan, Kh" uniqKey="Chan K">KH Chan</name></author><author><name sortKey="Yuen, Ky" uniqKey="Yuen K">KY Yuen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Li, Ks" uniqKey="Li K">KS Li</name></author><author><name sortKey="Poon, Rw" uniqKey="Poon R">RW Poon</name></author><author><name sortKey="Wong, Bh" uniqKey="Wong B">BH Wong</name></author><author><name sortKey="Tsoi, Hw" uniqKey="Tsoi H">HW Tsoi</name></author><author><name sortKey="Yip, Bc" uniqKey="Yip B">BC Yip</name></author><author><name sortKey="Huang, Y" uniqKey="Huang Y">Y Huang</name></author><author><name sortKey="Chan, Kh" uniqKey="Chan K">KH Chan</name></author><author><name sortKey="Yuen, Ky" uniqKey="Yuen K">KY Yuen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woo, Pcy" uniqKey="Woo P">PCY Woo</name></author><author><name sortKey="Lau, Skp" uniqKey="Lau S">SKP Lau</name></author><author><name sortKey="Huang, Y" uniqKey="Huang Y">Y Huang</name></author><author><name sortKey="Yuen, Ky" uniqKey="Yuen K">KY Yuen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Woo, Pcy" uniqKey="Woo P">PCY Woo</name></author><author><name sortKey="Lau, Skp" uniqKey="Lau S">SKP Lau</name></author><author><name sortKey="Li, Ksm" uniqKey="Li K">KSM Li</name></author><author><name sortKey="Tsang, Akl" uniqKey="Tsang A">AKL Tsang</name></author><author><name sortKey="Yuen, Ky" uniqKey="Yuen K">KY Yuen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wu, Zq" uniqKey="Wu Z">ZQ Wu</name></author><author><name sortKey="Yang, L" uniqKey="Yang L">L Yang</name></author><author><name sortKey="Yang, F" uniqKey="Yang F">F Yang</name></author><author><name sortKey="Ren, Xw" uniqKey="Ren X">XW Ren</name></author><author><name sortKey="Jiang, Jy" uniqKey="Jiang J">JY Jiang</name></author><author><name sortKey="Dong, J" uniqKey="Dong J">J Dong</name></author><author><name sortKey="Sun, Ll" uniqKey="Sun L">LL Sun</name></author><author><name sortKey="Zhu, Yf" uniqKey="Zhu Y">YF Zhu</name></author><author><name sortKey="Zhou, Hn" uniqKey="Zhou H">HN Zhou</name></author><author><name sortKey="Jin, Q" uniqKey="Jin Q">Q Jin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yuan, J" uniqKey="Yuan J">J Yuan</name></author><author><name sortKey="Hon, Cc" uniqKey="Hon C">CC Hon</name></author><author><name sortKey="Li, Y" uniqKey="Li Y">Y Li</name></author><author><name sortKey="Wang, D" uniqKey="Wang D">D Wang</name></author><author><name sortKey="Xu, G" uniqKey="Xu G">G Xu</name></author><author><name sortKey="Zhang, H" uniqKey="Zhang H">H Zhang</name></author><author><name sortKey="Zhou, P" uniqKey="Zhou P">P Zhou</name></author><author><name sortKey="Poon, Ll" uniqKey="Poon L">LL Poon</name></author><author><name sortKey="Lam, Tt" uniqKey="Lam T">TT Lam</name></author><author><name sortKey="Leung, Fc" uniqKey="Leung F">FC Leung</name></author><author><name sortKey="Shi, Z" uniqKey="Shi Z">Z Shi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zaki, Am" uniqKey="Zaki A">AM Zaki</name></author><author><name sortKey="Van Boheemen, S" uniqKey="Van Boheemen S">S van Boheemen</name></author><author><name sortKey="Bestebroer, Tm" uniqKey="Bestebroer T">TM Bestebroer</name></author><author><name sortKey="Osterhaus, Ad" uniqKey="Osterhaus A">AD Osterhaus</name></author><author><name sortKey="Fouchier, Ra" uniqKey="Fouchier R">RA Fouchier</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Ge, Xing Yi" sort="Ge, Xing Yi" uniqKey="Ge X" first="Xing-Yi" last="Ge">Xing-Yi Ge</name></noRegion><name sortKey="Hu, Ben" sort="Hu, Ben" uniqKey="Hu B" first="Ben" last="Hu">Ben Hu</name><name sortKey="Li, Bei" sort="Li, Bei" uniqKey="Li B" first="Bei" last="Li">Bei Li</name><name sortKey="Li, Zong Xiao" sort="Li, Zong Xiao" uniqKey="Li Z" first="Zong-Xiao" last="Li">Zong-Xiao Li</name><name sortKey="Luo, Chu Ming" sort="Luo, Chu Ming" uniqKey="Luo C" first="Chu-Ming" last="Luo">Chu-Ming Luo</name><name sortKey="Shi, Zheng Li" sort="Shi, Zheng Li" uniqKey="Shi Z" first="Zheng-Li" last="Shi">Zheng-Li Shi</name><name sortKey="Wang, Bo" sort="Wang, Bo" uniqKey="Wang B" first="Bo" last="Wang">Bo Wang</name><name sortKey="Wang, Ning" sort="Wang, Ning" uniqKey="Wang N" first="Ning" last="Wang">Ning Wang</name><name sortKey="Wu, Li Jun" sort="Wu, Li Jun" uniqKey="Wu L" first="Li-Jun" last="Wu">Li-Jun Wu</name><name sortKey="Yang, Xing Lou" sort="Yang, Xing Lou" uniqKey="Yang X" first="Xing-Lou" last="Yang">Xing-Lou Yang</name><name sortKey="Zhang, Wei" sort="Zhang, Wei" uniqKey="Zhang W" first="Wei" last="Zhang">Wei Zhang</name><name sortKey="Zhang, Yun" sort="Zhang, Yun" uniqKey="Zhang Y" first="Yun" last="Zhang">Yun Zhang</name><name sortKey="Zhang, Yun Zhi" sort="Zhang, Yun Zhi" uniqKey="Zhang Y" first="Yun-Zhi" last="Zhang">Yun-Zhi Zhang</name><name sortKey="Zhang, Yun Zhi" sort="Zhang, Yun Zhi" uniqKey="Zhang Y" first="Yun-Zhi" last="Zhang">Yun-Zhi Zhang</name><name sortKey="Zhou, Ji Hua" sort="Zhou, Ji Hua" uniqKey="Zhou J" first="Ji-Hua" last="Zhou">Ji-Hua Zhou</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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